FastQCFastQC Report
Wed 8 May 2024
EGAF00007960421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536352
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50070.9335287274028995No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42050.7840000596623113No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20500.38221168188055604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19520.36394009903943675No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16670.3108033530218961No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11820.22037766243064258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.18849561482011812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9610.17917337867668995No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8950.16686802696736472No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8790.1638849114014677No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8570.1597831274983593No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7930.1478506652347712No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7920.14766422051190264No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7820.145799773283217No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7300.13610464769405167No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6940.12939263767078338No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6280.11708728596145815No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5650.10534126842073861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)