FastQCFastQC Report
Wed 8 May 2024
EGAF00007960422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523704
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25040.478132685639216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21290.4065273513282312No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20400.3895330186517575No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18610.3553534057406474No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17910.34198707666926353No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12840.24517666468081206No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11460.21882590165436963No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9180.17528985839329086No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8690.16593342804332217No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8530.16287826711272016No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7880.15046667583214945No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7490.14301972106380703No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7330.13996456013320502No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7330.13996456013320502No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7230.13805508455157875No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7050.1346180285046515No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6130.11705085315368988No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6070.11590516780471412No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5900.11265905931594947No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5300.1012022058261919No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5240.10005652047721614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)