FastQCFastQC Report
Wed 8 May 2024
EGAF00007960423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523704
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53861.0284435482639047No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42090.8036982723064937No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40700.7771565617218887No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19840.37883995539465043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18550.35420772039167164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16650.3179276843407726No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11620.22188106258497164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9240.1764355437422666No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8780.16765195606678582No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8540.16306921467088278No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8220.15695889280967876No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7950.15180330873928782No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7670.14645677711073432No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7520.1435925637382949No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7380.14091929792401814No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6150.11743274827001512No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5750.10979484594351008No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5750.10979484594351008No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5630.10750347524555856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)