FastQCFastQC Report
Wed 31 May 2023
EGAF00007960424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474119
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32510.6856928323901805No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17130.3613016985187263No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16340.3446392150493863No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13690.28874607429780286No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13260.27967662127018744No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13020.27461460097570445No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10950.23095467593578825No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10930.230532840911248No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10560.22272889295725334No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9810.20691007953699386No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9230.19467686382532656No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8530.1799126379664177No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8270.17442878264739445No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8250.17400694762285418No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7710.16261740196026736No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7500.1581881342025947No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7040.1484859286381689No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7000.1476422585890884No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6880.14511124844184686No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6270.13224528019336917No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6230.13140161014428867No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6050.1276050949234264No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5760.12148848706759273No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5660.11937931194489149No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5580.11769197184673046No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5330.1124190340399773No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5180.10925527135592542No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4900.10334958101236187No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4840.10208407593874111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)