FastQCFastQC Report
Wed 8 May 2024
EGAF00007960425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474119
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT33320.7027771508840607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32170.6785216369729962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17400.3669964713500197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15070.3178526909910803No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13960.2944408471290963No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13820.2914880019573145No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11670.24614073681923737No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11230.23686036627935178No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9670.2039572343652121No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG9620.2029026468038615No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9050.1908803486044643No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9050.1908803486044643No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8330.17569428772101517No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8300.1750615351842048No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7520.15860996922713494No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7500.1581881342025947No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7420.1565007941044337No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7210.15207152634676105No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7190.15164969132222078No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7160.15101693878541042No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6270.13224528019336917No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6130.1292924350215874No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.1284487649725069No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5930.12507408477618487No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5890.12423041472710437No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5810.12254307462894337No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5480.11558279672402921No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5210.10988802389273579No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5030.10609150867187352No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG4960.10461508608598263No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4900.10334958101236187No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4890.10313866350009175No Hit
CTGCACGTTATTAACGCGTCCGACGATGAAT4750.10018581832830999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)