FastQCFastQC Report
Wed 8 May 2024
EGAF00007960426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453802
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30180.6650477521033402No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15870.34971198892909244No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14910.32855738846457266No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13370.2946218835527389No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12550.2765523289892949No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11840.26090673906241046No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10750.23688745311832032No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10710.23600601143229866No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10230.2254287112000388No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9740.2146310505462735No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9170.20207050652046488No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8760.19303572923874288No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8420.1855434749075588No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7550.16637211823658776No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7450.16416851402153362No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7140.1573373409548658No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7000.15425229505378998No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6570.14477679692905715No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6370.14036958849894887No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6210.13684382175486226No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5940.13089409037421607No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5920.13045336953120523No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5540.1220796735139995No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5480.12075751098496702No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT4960.10929876906668548No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4940.10885804822367465No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4790.10555264190109342No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4740.10445083979356636No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4670.10290831684302845No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4550.1002639917849635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)