FastQCFastQC Report
Wed 8 May 2024
EGAF00007960427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453802
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38800.8549984354410073No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30340.6685735188474268No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29960.660199822830221No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16110.35500063904522233No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14190.31269143811618283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13050.2875703500645656No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12720.2802984561548869No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11370.250549799251656No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10940.24107430112692319No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9780.21551249223229516No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9150.20162978567745404No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG8810.19413753134626996No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8280.182458429006483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8210.1809159060559451No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7460.16438887444303904No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7400.16306671191400657No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7280.16042238685594157No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6860.15116724915271418No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6680.14720076156561673No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.1438953552430355No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6120.1348605779613135No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6080.13397913627529187No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5570.12274075477851573No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5560.12252039435701034No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5340.11767246508389122No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5310.11701138381937497No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5050.11128201286023419No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4700.1035693981075447No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4610.10158615431399597No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4610.10158615431399597No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG4600.10136579389249055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)