FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473315
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32350.6834771769329093No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17110.36149287472402103No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15430.32599854219705693No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13730.2900816580923909No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13640.2881801759927321No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13420.2835321086380106No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11040.2332484708914782No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10860.22944550669216063No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10340.21845916567190984No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9840.207895376229361No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9220.19479627732060045No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8830.18655652155541236No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8450.17852804157907526No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8250.1743025258020557No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7590.16035832373789125No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7490.1582455658493815No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7350.1552877048054678No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6910.14599157009602484No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6790.14345626062981312No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6520.13775181433083677No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6440.13606160802002892No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6250.1320473680318604No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6060.12803312804369182No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5420.11451147755722933No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5370.11345509861297445No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5310.11218744387986859No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5050.1066942733697432No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4910.10373641232582953No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4820.10183493022617074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)