FastQCFastQC Report
Wed 8 May 2024
EGAF00007960429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473315
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32810.6931958632200543No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31430.6640398043586195No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17460.3688875273338052No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14490.3061386180450651No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14340.30296948121230044No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13820.2919831401920497No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11970.252897119254619No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11420.24127695086781528No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10210.21571258041684713No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9990.21106451306212565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9140.19310607100979263No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8970.18951438259932604No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG8730.1844437636669026No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8500.17958442052333012No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7980.16859807950307934No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7940.16775297634767544No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7500.15845684163823245No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7350.1552877048054678No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7070.14937198271764046No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7010.1481043279845346No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6480.13690671117543285No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6420.135639056442327No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6100.12887823119909575No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6000.12676547331058596No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5940.1254978185774801No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5560.11746933860114299No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5270.11134234072446468No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4960.10479279127008441No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4940.10437023969238246No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4810.10162365443731976No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4790.10120110285961781No Hit
CTGCACGTTATTAACGCGTCCGACGATGAAT4790.10120110285961781No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG4770.10077855128191585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)