FastQCFastQC Report
Wed 8 May 2024
EGAF00007960430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460986
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT31730.6883072370961374No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17000.36877475671712373No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15310.332114207372892No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12830.27831647815768806No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12720.2759302885554008No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12320.26725323545617435No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11170.24230670779589836No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10380.22516952792492614No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10270.22278333832263889No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9010.1954506210600756No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9010.1954506210600756No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8820.19132902083794304No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8510.18460430468604253No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8260.179181146499026No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7730.16768405114255097No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7710.16725019848758965No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7200.15618695578607594No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6940.15054687127157876No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6530.14165289184487165No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6160.13362661772808718No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6040.13102350179831926No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5830.12646804892122537No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5640.12234644869909281No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5610.12169566971665083No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5600.12147874338917018No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5540.12017718542428621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)