FastQCFastQC Report
Wed 8 May 2024
EGAF00007960431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460986
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38320.8312616869058931No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33190.7199784809083138No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31380.6807148156343144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17110.371160946319411No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14020.30413071112788675No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12880.27940110979509136No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12670.2748456569179975No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11470.2488144976203182No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11350.24621138169055026No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9240.2004399265921308No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9100.19740295800740154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8980.1947998420776336No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG8760.19002746287305905No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8270.17939807282650666No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8030.1741918409669708No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7850.1702871670723189No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7550.16377937724789907No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7310.1585731453883632No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6750.1464252710494462No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.13883284958762307No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.13210813343572256No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6030.1308065754708386No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5910.12820345954107068No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5670.1229972276815348No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5620.1219125960441315No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5370.11648943785711498No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5290.11475402723726967No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG4850.10520926882812061No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4610.10000303696858473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)