FastQCFastQC Report
Wed 8 May 2024
EGAF00007960433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518730
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39960.7703429529813198No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28590.5511537794228212No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG27530.5307192566460394No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA26610.5129836331039269No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25880.4989108013802942No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24140.4653673394636902No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC21600.4164015962061188No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20570.3965454089796233No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19960.3847859194571357No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG18280.35239912864110423No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15790.30439727796734334No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14690.2831916411235132No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC12310.2373103541341353No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11790.2272858712625065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10390.20029687891581363No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9680.1866096042257051No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9670.186416825708943No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9410.1814045842731286No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9320.17966957762226976No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8640.16656063848244754No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8400.16193395408015732No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6510.1254988144121219No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6070.11701655967458988No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6000.11566711005725522No Hit
AACGCAATCCTGGAAACCCTGCGTCGTCCGG5890.1135465463728722No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5740.11065486862144082No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5660.10911264048734409No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5620.10834152642029571No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5600.10795596938677153No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5510.10622096273591271No Hit
GCGATCCCGAACGAGATCGTTGAACAGGGCT5460.10525707015210226No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5370.10352206350124342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)