FastQCFastQC Report
Wed 8 May 2024
EGAF00007960435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497652
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40310.8100037777402683No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35820.7197800872899134No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27420.5509874370041715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA26010.5226543849919221No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG25970.5218506104667519No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24950.5013543600749117No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24280.4878911367783109No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC19780.3974665026966635No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG18560.37295137967897246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18430.3703391124721693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18110.36390891627080774No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15690.31528055749801065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12960.26042294615514455No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11740.23590782313745345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11100.2230474307347303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10010.20114457492384236No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9130.183461535370098No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9050.18185398631975758No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8750.1758256773809811No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8700.17482095922451835No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8230.16537660855376848No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6470.13001052944627972No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5620.11293032078641299No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5600.11252843352382791No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5600.11252843352382791No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5400.1085095608979769No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5360.10770578637280669No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5330.10710295547892905No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5310.10670106821634394No Hit
AACGCAATCCTGGAAACCCTGCGTCGTCCGG5280.1060982373224663No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5130.10308408285307806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)