FastQCFastQC Report
Wed 8 May 2024
EGAF00007960436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516636
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28120.5442903707832981No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27600.534225257241075No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24940.48273833027508734No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA24120.4668664204585046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20190.39079738926439506No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18950.36679596466370906No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA17610.34085894130490324No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17420.3371813036644756No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14010.2711773860125891No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13170.2549183564443825No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11890.23014269234044857No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11880.2299491324646366No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11460.2218196176805333No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11300.21872265966754156No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10490.2030443097267709No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9660.18697884003437623No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8850.17130049009360554No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8460.1637516549369382No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8180.15833197841420263No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7950.15388010127052704No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6990.1352983531925766No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6110.11826508412112202No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5910.11439388660488235No Hit
GCTGTAGTGACCGGTATTCAGGTACATAGACGGAATGCCCAGAG5650.10936132983377078No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5650.10936132983377078No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5620.10878065020633483No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5530.10703861132402698No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5430.10510301256590714No Hit
GCGGTCACCACCGAACTGTTCACCAAACTGATCGCCGAAGAAGA5220.10103825517385548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)