FastQCFastQC Report
Wed 8 May 2024
EGAF00007960437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516636
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38370.7426892434905814No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28670.5549361639529572No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG27140.5253215029537237No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA26770.5181597875486803No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25830.49996515922235385No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23830.46125318405995713No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC20340.39370078740157477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20020.3875068713755913No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19740.3820871948528558No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG18500.3580857702521698No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15210.29440457111002716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13660.2644027903591697No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC12460.24117560526173165No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11730.22704573432745684No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10630.20575414798813862No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10430.201882950471899No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9310.1802042443809568No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9120.1765266067405291No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9110.17633304686471712No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8900.17226828947266545No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8220.15910621791745058No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6920.13394343406189269No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6690.12949155691821707No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6380.12349120076804558No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6040.11691016499043815No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6020.11652304523881417No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5910.11439388660488235No Hit
AACGCAATCCTGGAAACCCTGCGTCGTCCGG5720.11071624896445466No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5640.1091677699579588No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5290.10239317430453937No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5270.10200605455291539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)