FastQCFastQC Report
Wed 8 May 2024
EGAF00007960439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503129
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41140.8176829401604758No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37420.7437456397862179No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG27780.552144678601313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27050.5376354771837839No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA26320.5231262757662548No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25150.4998718022614479No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25040.4976854842396284No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC19800.39353724392750167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19550.3885683393324575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19260.38280441000220616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG18190.36153749833541693No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16290.3237738234130809No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13080.2599730884127132No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11530.22916587992343912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11180.2222094134903772No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT10110.20094250182358797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9640.19160096118490486No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9620.19120344881730134No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8950.17788678450258283No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8640.171725342804728No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7890.15681862901959537No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6370.12660768908172657No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6270.12462012724370887No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6250.12422261487610534No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5640.11209848766419744No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5520.10971341345857623No Hit
AACGCAATCCTGGAAACCCTGCGTCGTCCGG5500.1093159010909727No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5500.1093159010909727No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5240.10414824031212672No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5240.10414824031212672No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5100.10136565373890195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)