FastQCFastQC Report
Wed 8 May 2024
EGAF00007960440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506334
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14950.2952596507443703No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10530.20796549313299129No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10220.20184305221454613No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9470.18703069515379175No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8400.16589839908044887No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7910.1562209924674227No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7580.14970355536069077No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7480.14772857441925685No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7470.14753107632511347No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6800.13429870401750624No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6550.12936125166392146No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6160.12165882599232916No Hit
GCGAATGTGACGAGTCAGTTCATCAGAACGGGAGAAGCGACGGT5710.11277141175587656No Hit
AACGATGATATCGTCGACAATGCGAATACCTGCGTTGAAGCTCG5210.10289650704870697No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5120.10111902420141645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)