FastQCFastQC Report
Wed 8 May 2024
EGAF00007960441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506334
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15150.29920961262723816No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11510.22732030635904366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10770.21270544739243266No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10060.19868308270825186No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9480.18722819324793516No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9230.18229074089435038No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8920.17616829997590525No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8820.17419331903447133No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8300.16392341813901498No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7950.15701098484399625No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6850.13528619448822318No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6820.13469370020579302No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6710.1325212211702157No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5900.11652387554460099No Hit
CTGAACACCTCTTACCAGAGCCAGCTGATCA5840.11533888697974064No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.10585897846085786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.10408149561356733No Hit
CTGCGTAAACGTGGTGAATGGTTTAAGAAAC5190.1025015108604202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)