FastQCFastQC Report
Wed 8 May 2024
EGAF00007960442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485442
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15030.3096147428529052No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10220.2105297852266594No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10010.20620383073570064No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8660.17839412329382295No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8340.1718021926409334No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7590.15635235517322357No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7530.1551163681758068No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7470.15388038117839No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7450.1534683855125844No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7300.15037841801904245No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5960.12277470841006752No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5420.11165082543331643No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5280.10876685577267728No Hit
AACGATGATATCGTCGACAATGCGAATACCTGCGTTGAAGCTCG5200.10711887310945489No Hit
GCGAATGTGACGAGTCAGTTCATCAGAACGGGAGAAGCGACGGT5170.1065008796107465No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4970.10238092295269054No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4960.10217492511978774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)