FastQCFastQC Report
Wed 8 May 2024
EGAF00007960443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485442
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41380.8524190325517775No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14730.3034348078658212No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10620.2187696985427713No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10100.20805781123182585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9720.20022989358151952No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8820.18169008862026773No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8760.18045410162285092No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8480.1746861623015726No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7960.1639742749906271No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7790.16047231183127952No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6770.13946053287519417No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6330.13039662822747106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6220.12813065206554028No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5730.11803675825330316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5430.11185682326621924No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5260.10835486010687166No Hit
CTGAACACCTCTTACCAGAGCCAGCTGATCA5240.10794286444106609No Hit
GAACGTCGTCGCGATCGTGATCGTGACCGTG5150.1060888839449409No Hit
CTGCGTAAACGTGGTGAATGGTTTAAGAAAC4970.10238092295269054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)