FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505648
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14960.2958579881656805No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11040.21833370249659842No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10330.20429231402082082No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9500.18787773312660191No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8920.1764073031041357No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8260.16335474480270862No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7830.15485080530329398No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7680.1518843147802424No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7660.15148878271050217No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7200.14239154510647722No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6910.13665633009524414No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5960.11786855678258394No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5410.10699142486472803No Hit
AACGATGATATCGTCGACAATGCGAATACCTGCGTTGAAGCTCG5280.10442046641141664No Hit
GCGAATGTGACGAGTCAGTTCATCAGAACGGGAGAAGCGACGGT5250.10382716830680631No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5190.10264057209758568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)