FastQCFastQC Report
Wed 8 May 2024
EGAF00007960445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505648
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15010.296846818340031No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11400.2254532797519223No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11330.22406891750783153No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10300.20369901591621048No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9250.18293358225484924No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9230.18253805018510902No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.17897826155744706No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8970.17739613327848622No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8650.1710676201626428No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8340.16493687308166946No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7150.1414027149321267No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7120.14080941682751638No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6610.1307233490491409No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5970.11806632281745405No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5670.11213334177135083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5600.11074897952726007No Hit
CTGAACACCTCTTACCAGAGCCAGCTGATCA5510.1089690852134291No Hit
GAACGTCGTCGCGATCGTGATCGTGACCGTG5280.10442046641141664No Hit
CTGCGTAAACGTGGTGAATGGTTTAAGAAAC5270.10422270037654653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)