FastQCFastQC Report
Wed 8 May 2024
EGAF00007960446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490443
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14310.2917770260764248No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10360.2112375953984459No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9890.20165442263423067No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9060.18473094732721235No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8570.17473997997728583No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8000.1631178342845142No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7810.159243785720257No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7450.15190348317745386No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7240.14762164002748537No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6700.13661118621328064No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6590.13436831599186858No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5660.1154058677562938No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5580.11377468941344865No Hit
AACGATGATATCGTCGACAATGCGAATACCTGCGTTGAAGCTCG5140.10480320852780038No Hit
GCGAATGTGACGAGTCAGTTCATCAGAACGGGAGAAGCGACGGT5010.10215254372067703No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4940.10072526267068752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)