FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490443
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41040.8367944898795578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14400.2936121017121256No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10610.21633502771983698No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10560.21531554125555877No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10480.21368436291271362No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9020.18391535815578977No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8890.1812646933486664No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8420.1716815205844512No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8300.16923475307018349No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7780.15863209384169005No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7150.14578656439178458No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6530.13314493223473473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6150.1253968351062203No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5830.11887212173483973No Hit
GAACGTCGTCGCGATCGTGATCGTGACCGTG5500.11214351107060351No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5460.11132792189918095No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5030.1025603383063883No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5000.10194864642782138No Hit
CTGCGTAAACGTGGTGAATGGTTTAAGAAAC4990.10174474913496574No Hit
CTGAACACCTCTTACCAGAGCCAGCTGATCA4970.10133695454925444No Hit

[OK]Adapter Content

Adapter graph