FastQCFastQC Report
Wed 8 May 2024
EGAF00007960448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556742
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28030.5034648005718986No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27700.4975374590025542No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25070.45029834285899034No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA21670.3892287630536227No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT19460.3495335361801337No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG19080.3427081125548279No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT16350.29367283229934155No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15550.2793035194039609No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT14860.2669099870316951No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12430.22326319911197645No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12410.22290396628959194No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11590.20817542057182684No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11160.20045191489055972No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10790.19380610767644618No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10310.1851845199392178No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10090.18123295889298813No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC10000.17961641119225782No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9250.16614518035283848No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9190.16506748188568493No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8600.15447011362534174No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8500.15267394951341914No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7820.1404600335523456No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7700.13830463661803852No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7570.13596962327253914No Hit
CAGCAGACCCAGATCGTACTGTTCGCCAGTTACCATGCTTTTCA7510.13489192480538562No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6920.1242945565450424No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6670.11980414626523594No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT6530.11728951650854436No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6420.1153137359854295No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6230.11190102417277661No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6180.11100294211681533No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6120.10992524364966179No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC6080.10920677800489276No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5930.10651253183700889No Hit
CTGGGCCACGCGAGTTTCGGTCAGTGGGTTGACCGGTTTACGGG5850.10507560054747082No Hit
ATCCGCAATACGGTCGGTTTTCACAGACGGTTCGGTTACAGCGG5610.10076480667885664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)