FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556742
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34600.6214727827252121No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28510.512086388309127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28000.502925951338322No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26000.4670026690998703No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA22330.40108344619231173No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC21980.3947968718005827No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG19550.35115008388086405No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA17820.32007644474460345No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16410.2947505307664951No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA14960.2687061511436177No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13020.23386056737231967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12780.22954977350370548No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11970.2150008441971326No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11420.20512194158155841No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11270.20242769541367456No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11030.19811690154506034No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10710.19236917638690812No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG10650.1912914779197546No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10560.18967493021902426No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9910.1779998634915275No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9490.17045597422145267No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.1648878654744927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9120.1638101670073391No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8720.1566255105596488No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8550.15357203156938043No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7730.1388434858516153No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7620.13686770532850046No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7560.1357900068613469No Hit
CCGGAGATCAAAGGTCAGCTGCTGGGCGGTG7010.12591110424577273No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7000.1257314878345805No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6900.12393532372265789No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC6820.12249839243311982No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6520.11710990009735209No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6250.11226025699516114No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6170.11082332570562309No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6110.10974562723846952No Hit
GACGACCAGGGTCAGGTCACTGCGACGCGTG5890.10579406619223984No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG5780.10381828566912502No Hit
ATCAACACCCCGTTCCGTACTTCTGAAGTTG5570.10004634103408762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)