FastQCFastQC Report
Wed 8 May 2024
EGAF00007960453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556354
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34130.6134583376770906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28120.50543359084324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28060.5043551407916542No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25890.46535119725929897No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC22650.4071148944736624No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA22460.4036998026436406No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG20190.36289844235864216No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA18110.32551217390366566No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16940.3044823978977414No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA15970.28704745539710325No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13560.24372971165840454No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13150.23636030297256783No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12120.2178469104203439No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11640.20921931000765698No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11280.20274860969814185No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11010.19789558446600547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10900.19591842603809803No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG10550.18962746740384717No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10210.18351625044486064No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9750.17524813338270237No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9710.17452916668164514No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9690.17416968333111651No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC9150.16446363286684376No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8540.15349939067572085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8360.15026404052096326No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8290.1490058487941131No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8120.14595024031461984No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7860.14127695675774776No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC7170.12887478116451037No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7110.1277963311129245No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7100.1276165894376602No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6730.12096614745288072No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6470.11629286389600865No Hit
CCGGAGATCAAAGGTCAGCTGCTGGGCGGTG6150.11054113028755073No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6140.11036138861228642No Hit
GACGACCAGGGTCAGGTCACTGCGACGCGTG6090.10946268023596488No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5830.10478939667909282No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5810.10442991332856419No Hit
ATCAACACCCCGTTCCGTACTTCTGAAGTTG5590.10047559647274937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)