FastQCFastQC Report
Wed 8 May 2024
EGAF00007960456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529542
Total Bases23.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15710.29667146326448135No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11990.2264220779466029No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11340.21414731975933918No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9920.18733169418100926No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9200.17373503895819406No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9130.17241314192264257No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8020.15145163178746918No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7600.14352024957416032No Hit
GTCGGTGACACCTTTACGGCTGGTCAGGAAGTGCAGTGCCAGCG7580.14314256470685988No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6610.12482484864278942No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6440.12161452727073585No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6250.11802652103138185No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6050.11424967235837763No Hit
ACCAGCCAGTTTTGCCAGACGTTCCTGCAGCTTCTCACGATCGT5500.10386333850761602No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5460.10310796877301517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)