FastQCFastQC Report
Wed 8 May 2024
EGAF00007960457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529542
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20670.390337310354986No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12330.2328427206907101No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11920.22510018091105147No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11200.21150352568823624No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9990.18865359121656072No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9570.18072220900325187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9090.17165777218804174No Hit
GTTGCCCAGAAAAAAGCGCGTCACATGGTGG8270.15617269262872444No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC8220.15522848046047338No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7930.14975204988461727No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7030.1327562308560983No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6960.1314343338205468No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6930.13086780651959617No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6710.12671327297929152No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6700.12652443054564133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6480.1223698970053367No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6220.1174599937304312No Hit
AGCGCCGATATCTCTCTGCTGGGCAAAGCTC5910.11160587828727467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)