FastQCFastQC Report
Wed 8 May 2024
EGAF00007960458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508837
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14160.27828165011585243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11920.23425969416532208No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11190.21991325316358676No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9350.18375236077565113No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8990.1766774035693159No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8990.1766774035693159No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7580.1489671545111696No Hit
GTCGGTGACACCTTTACGGCTGGTCAGGAAGTGCAGTGCCAGCG7450.14641230885332632No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7000.1375686123454073No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6750.1326554476187856No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6360.12499091064525575No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6170.12125690545302327No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5490.10789309739661226No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5310.10435561879344465No Hit
ACCAGCCAGTTTTGCCAGACGTTCCTGCAGCTTCTCACGATCGT5220.10258687949186085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)