FastQCFastQC Report
Wed 8 May 2024
EGAF00007960459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508837
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41870.8228568284146004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17980.3533548071386318No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11750.23091874215121935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11430.22462989130114358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10400.20438765262746225No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9460.1859141532553647No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9260.18198362147406735No Hit
GTTGCCCAGAAAAAAGCGCGTCACATGGTGG8070.1585969573753481No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7900.15525600536124537No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7050.1385512452907316No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6840.1344241869203694No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6650.13069018172813693No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6430.12636659676870982No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6320.12420480428899627No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6220.12223953839834761No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5960.11712984708266104No Hit
AGCGCCGATATCTCTCTGCTGGGCAAAGCTC5600.11005488987632583No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5490.10789309739661226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)