FastQCFastQC Report
Wed 8 May 2024
EGAF00007960460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528890
Total Bases23.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14940.2824783981546257No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11610.2195163455538959No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11580.2189491198547902No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9880.186806330238802No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9620.18189037417988616No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8910.16846603263438523No Hit
GTCGGTGACACCTTTACGGCTGGTCAGGAAGTGCAGTGCCAGCG8280.15655429295316606No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7630.14426440280587646No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7430.14048289814517198No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7380.13953752197999583No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6750.12762578229877666No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6610.12497872903628354No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5930.11212161318988827No Hit
ACCAGCCAGTTTTGCCAGACGTTCCTGCAGCTTCTCACGATCGT5580.1055039800336554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)