FastQCFastQC Report
Wed 8 May 2024
EGAF00007960461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528890
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19180.362646296961561No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12450.23539866512885477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.2181928189226493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10820.20457940214411316No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10490.1983399194539507No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.1883189321030838No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9300.17583996672275898No Hit
GTTGCCCAGAAAAAAGCGCGTCACATGGTGG9080.17168031159598404No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC8340.15768874435137742No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7820.14785683223354573No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7330.1385921458148197No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7090.13405434022197432No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7040.1331089640567982No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6590.12460057857021309No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6390.12081907390950859No Hit
AGCGCCGATATCTCTCTGCTGGGCAAAGCTC6140.11609219308362796No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.1124997636559587No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5870.1109871617916769No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5440.10285692677116225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)