FastQCFastQC Report
Wed 8 May 2024
EGAF00007960462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514802
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14710.28574092563742953No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11380.2210558622538374No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11250.2185306195391626No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9510.1847312170504388No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8980.17443599675214938No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8420.16355802813508882No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7540.14646407745113654No Hit
GTCGGTGACACCTTTACGGCTGGTCAGGAAGTGCAGTGCCAGCG7390.14355033585728105No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7000.13597460771325676No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6740.1309241222839072No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6680.129758625646365No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6620.1285931290088228No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5970.11596691543544896No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5260.10217520522453293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)