FastQCFastQC Report
Sun 21 May 2023
EGAF00007960463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514802
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40440.7855447337034434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19000.3690739352216969No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11960.23232232975007866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11470.2228041072101507No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10500.2039619115698851No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9280.18026347993986036No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9130.17734973834600487No Hit
GTTGCCCAGAAAAAAGCGCGTCACATGGTGG7990.15520530223270304No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7410.14393883473646177No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7270.14121934258219665No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7220.14024809538424482No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6930.13461486163612418No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6710.1303413739651361No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6680.129758625646365No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6610.12839887956923243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6420.12470814021701547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6040.11732666151258153No Hit
AGCGCCGATATCTCTCTGCTGGGCAAAGCTC5590.10858543673101502No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5220.10139820746617147No Hit
CGTCGTTTCCAGCGTGAACTGGAAGCAGCGG5190.10081545914740035No Hit

[OK]Adapter Content

Adapter graph