FastQCFastQC Report
Wed 8 May 2024
EGAF00007960464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542775
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23240.42817005204734926No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12380.22808714476532632No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT11770.21684860209110587No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA11180.20597853622587625No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11140.20524158260789463No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11110.20468886739440834No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10190.18773893418082999No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9580.17650039150660957No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9260.17060476256275622No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8200.15107549168624199No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7910.14573257795587488No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7900.1455483395513795No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7630.14057390263000322No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7060.13007231357376445No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6670.12288701579844319No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6660.12270277739394778No Hit
AGAGCGACGACGTTCGGCGCCGAAACCACGACCCGGACGTGCAT6630.12215006218046151No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6490.11957072451752566No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5710.10520012896688316No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5690.10483165215789232No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5650.10409469853991063No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5570.10262079130394731No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5550.10225231449495648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)