FastQCFastQC Report
Wed 8 May 2024
EGAF00007960466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520926
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22620.43422674237799613No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11230.2155776444255038No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT10740.20617131799910163No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10380.19926054756337752No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10240.19657302572726262No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10120.19426943558202125No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA9860.18927832360066496No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9510.18255951901037767No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8890.17065763659329733No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8620.16547455876650427No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7510.14416634992302169No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7240.13898327209622863No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7240.13898327209622863No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7160.1374475453327344No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6970.1338001942694356No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6390.12266617523410235No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6370.12228224354322878No Hit
AGAGCGACGACGTTCGGCGCCGAAACCACGACCCGGACGTGCAT5880.11287591711682658No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5570.10692497590828641No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5510.10577318083566571No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5510.10577318083566571No Hit
CCAACCCAGGCCATCGTGACACGCGCTGGCAGACCACGCAACGC5460.10481335160848182No Hit
ACGAACGATTACTTTCTGGCGGTCCACGATGTACAGGCCTTTGC5460.10481335160848182No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5370.10308565899955081No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5250.10078206885430945No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5240.10059010300887267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)