FastQCFastQC Report
Wed 8 May 2024
EGAF00007960467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520926
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42550.8168146723334985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22050.42328468918809964No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20100.38585134932792753No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11960.22959115114238876No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11230.2155776444255038No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG10830.20789901060803262No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10720.20578738630822804No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10110.19407746973658446No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10080.1935015722002741No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9610.1844791774647455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9050.1737290901202858No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8550.1641307978484468No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7590.14570207668651594No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7570.14531814499564236No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7350.1410948963960332No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7150.1372555794872976No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6600.12669745798827473No Hit
GTCAACATCAAACACAGCGGCCGCGAAGACA5970.11460360972575759No Hit
ACCGCCACCGTTAAAGCATATGGCGGCGAAG5960.11441164388032081No Hit
GGTGCCCTGCTGAACGACAAACACTCCAACG5870.11268395127138979No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5500.10558121499022893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5470.10500531745391861No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG5410.10385352238129791No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5380.10327762484498756No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5270.10116600054518299No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5220.10020617131799911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)