FastQCFastQC Report
Wed 8 May 2024
EGAF00007960468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542161
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22960.4234904391868836No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT12160.22428761936030073No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11820.21801641947687125No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11000.20289176093448258No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA10670.1968050081064481No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10580.19514498460789323No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10490.19348496110933838No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9150.16876905568641049No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9070.1672934792432506No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8080.14903322075914718No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8040.14829543253756725No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7720.14239312676492777No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7510.1385197386016331No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7190.1326174328289936No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7000.1291129387764889No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6790.12523955061319425No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6650.12265729183766445No Hit
AGAGCGACGACGTTCGGCGCCGAAACCACGACCCGGACGTGCAT6310.116386091954235No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5770.10642595096290584No Hit
CCAACCCAGGCCATCGTGACACGCGCTGGCAGACCACGCAACGC5680.104765927464351No Hit
ACGAACGATTACTTTCTGGCGGTCCACGATGTACAGGCCTTTGC5500.10144588046724129No Hit
CCAGTTAATACCATCGTGACAAGCAGACGCGGACCAGGCTACGC5480.10107698635645132No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5470.10089253930105632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)