FastQCFastQC Report
Wed 8 May 2024
EGAF00007960469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542161
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23310.429946086125708No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20450.37719422828274257No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13080.24125674845663928No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG12290.22668543108043554No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12090.22299648997253585No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11350.20934740787330702No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10800.1992028198265829No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10690.19717390221723805No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG10600.19551387871868323No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10580.19514498460789323No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.17946698489931956No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9280.1711668674065453No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8210.151431032479282No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8140.1501399030915171No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7940.1464509619836174No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7330.1351996916045234No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7270.13409300927215348No Hit
GTCAACATCAAACACAGCGGCCGCGAAGACA6530.12044392717292464No Hit
ACCGCCACCGTTAAAGCATATGGCGGCGAAG6280.11583275078805005No Hit
GGTGCCCTGCTGAACGACAAACACTCCAACG6070.11195936262475537No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5870.10827042151685569No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG5760.10624150390751087No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5660.10439703335356103No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5630.10384369218737607No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5480.10107698635645132No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5450.10052364519026635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)