FastQCFastQC Report
Wed 8 May 2024
EGAF00007960470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527937
Total Bases23.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22530.426755465140727No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12200.23108817908197382No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT10800.20456986344961617No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10790.20438044690938503No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10260.19434137027713536No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA10090.1911212890932062No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9740.1844917101851168No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9000.17047488620801346No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8980.17009605312755122No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8910.16877013734593332No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7760.14698723521935383No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7450.14111532247218891No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7130.1350539931847929No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6930.13126566238017034No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6620.12539374963300545No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6390.12103716920768956No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6290.11914300380537829No Hit
AGAGCGACGACGTTCGGCGCCGAAACCACGACCCGGACGTGCAT6110.11573350608121802No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5770.10929334371335975No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5760.10910392717312861No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5610.10626267906966172No Hit
CCAACCCAGGCCATCGTGACACGCGCTGGCAGACCACGCAACGC5590.10588384598919946No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5560.10531559636850608No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5480.10380026404665707No Hit
ACGAACGATTACTTTCTGGCGGTCCACGATGTACAGGCCTTTGC5480.10380026404665707No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5400.10228493172480808No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5350.10133784902365245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)