FastQCFastQC Report
Wed 8 May 2024
EGAF00007960471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527937
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41980.7951706358902673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22550.42713429822118926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21320.4038360637727607No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12870.24377908727745926No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10930.2070322784726208No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG10890.20627461231169628No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10790.20438044690938503No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10390.19680378530013998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10140.19206837179436181No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10130.1918789552541307No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9830.18619645904719692No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8890.16839130426547108No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8040.15229089834582535No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7350.13922115706987767No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7310.13846349090895316No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7030.13315982778248162No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6920.13107624583993924No Hit
GTCAACATCAAACACAGCGGCCGCGAAGACA6340.12009008650653392No Hit
ACCGCCACCGTTAAAGCATATGGCGGCGAAG6000.11364992413867563No Hit
GGTGCCCTGCTGAACGACAAACACTCCAACG5920.11213459181682661No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5870.111187509115671No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5800.10986159333405313No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5740.10872509409266636No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5590.10588384598919946No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5550.10512617982827498No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG5280.10001193324203457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)