FastQCFastQC Report
Wed 8 May 2024
EGAF00007960472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497103
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14120.2840457611400454No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13060.26272221249922045No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9790.19694107659780768No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7740.15570213818866513No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7100.14282754278288404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7040.14162054946359207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)