FastQCFastQC Report
Wed 8 May 2024
EGAF00007960473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497103
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15720.3162322496544982No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13950.2806259467353848No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13900.27962011896930816No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9380.1886932889159792No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9160.18426764674524193No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8180.16455342253013963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7130.14343103944253002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)