FastQCFastQC Report
Wed 8 May 2024
EGAF00007960474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473340
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13640.28816495542316306No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12360.26112308277348206No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8850.18696919761693498No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7600.1605611188574809No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6940.1466176532724891No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6330.13373051083787552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)