FastQCFastQC Report
Wed 8 May 2024
EGAF00007960475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473340
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40320.8518189884649512No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14580.30802383065027256No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13250.2799256348502134No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12880.27210884353741494No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8100.17112435036126253No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7930.16753285164997678No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6790.14344868382135464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)