FastQCFastQC Report
Wed 8 May 2024
EGAF00007960476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495629
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14570.29396988473233004No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13490.2721793922470235No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9080.18320154793202173No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8130.16403398509772432No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8120.16383222127841593No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6790.13699763331039952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)