FastQCFastQC Report
Wed 8 May 2024
EGAF00007960477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495629
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15220.30708453298737565No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14430.2911451912620125No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14410.2907416636233957No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8940.1803768544617042No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8720.17593805043691957No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8190.16524456801357468No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8140.1642357489170327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)