FastQCFastQC Report
Wed 8 May 2024
EGAF00007960478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478358
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14210.2970578520689526No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12410.25942913048386357No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9710.20298604810623008No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7170.14988774098060448No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7100.14842440180785102No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5990.12522002349704614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)