FastQCFastQC Report
Wed 8 May 2024
EGAF00007960479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478358
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39870.8334761831097212No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14590.30500169329247134No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13870.28995020465843574No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13320.27845253972965855No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9170.19169743163070335No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7990.16702971414714501No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7190.15030583788710547No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4840.10117945137323929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)